Practice Questions

XP is caused by defects in the NER pathway, which is responsible for cutting out UV-induced pyrimidine dimers and bulky DNA distortions.

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91. The treatment of a eukaryotic cell line with a specific drug blocks the activity of the enzyme histone deacetylase (HDAC). Biochemically, this inhibition maintains high levels of histone acetylation across the genome, forcing structural genes to remain inside

A. Densely packed heterochromatin, silencing gene expression
B. Open, accessible euchromatin, promoting transcription
C. A single-stranded RNA state that bypasses translation
D. A left-handed Z-DNA configuration that excludes polymerases

Inhibiting HDAC keeps histones acetylated, neutralizing their positive charges and keeping chromatin open (euchromatin) to boost transcription.

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90. An in vitro transcription assay utilizes a mutated RNA polymerase that cannot recognize or respond to the prokaryotic intrinsic termination signal. When this enzyme transcribes a gene containing a classic rho-independent terminator, the resulting molecular outcome will be

A. The production of an exceptionally short, truncated RNA molecule
B. The synthesis of an abnormally elongated RNA transcript due to read-through
C. The immediate conversion of the template DNA into a left-handed Z-conformation
D. The covalent attachment of the enzyme to the structural promoter

Without a functional termination response, the polymerase runs past the end of the gene, creating a long, un-terminated read-through transcript.

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89. The introduction of a chemical agent that intercalates flat aromatic rings directly between adjacent base pairs along the DNA double helix disrupts its geometry by increasing the vertical distance between base pairs from 0.34 nm to 0.68 nm. This alteration will directly induce

A. A nonsense mutation via base conversion
B. A frameshift mutation during subsequent DNA replication
C. The automatic removal of all upstream promoter sequences
D. The conversion of the B-DNA template into a single-stranded cistron

Intercalating agents distort the helix by stretching the backbone, which tricks DNA polymerase into inserting or omitting bases, causing frameshift mutations.

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Huntington's disease is a classic trinucleotide repeat disorder where a CAG expansion in the HTT gene produces a toxic, polyglutamine-expanded huntingtin protein.

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86. A molecular analysis of a mutant bacterial strain reveals a defect in DNA topoisomerase I. During gene transcription, this enzyme deficiency will result in the

A. Failure of the spliceosome to remove structural introns
B. Accumulation of excessive positive supercoiling ahead of the transcription bubble, stalling transcription
C. Spontaneous conversion of the template strand into an RNA-DNA virus
D. Immediate loss of the poly-A tail from the structural transcripts

Unwinding the helix creates torsional strain and positive supercoils ahead of the moving polymerase; without topoisomerase to relieve this stress, transcription stalls.

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85. The precise sequence of amino acids in a polypeptide chain is dictated directly by the sequence of

A. Sugars in the cellular polysaccharide matrix
B. Nucleotide triplets within the exons of a structural gene
C. Histone proteins forming the core nucleosomes
D. Fatty acids in the surrounding membrane

The linear sequence of nucleotide codons inside exons determines the exact order of amino acids added during protein translation.

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84. The presence of a negative electrical charge running along the entire outer surface of the DNA double helix is caused by the

A. Alkaline nature of the purine structures
B. Ionized oxygen atoms within the repeating phosphate groups
C. Hydroxyl groups located on the deoxyribose sugars
D. Hydrogen bonds holding the complementary strands together

Each phosphate group in the phosphodiester backbone loses a hydrogen atom at cellular pH, giving the exterior of the DNA a negative charge.

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Thymine is a pyrimidine base specific to DNA, whereas RNA uses uracil as the complementary partner for adenine.

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